disconnection

Yesterday was a two part work. Some of the runs where corrupted so the data was skewed. These runs need to be redone... that is being worked on... I had this though before abut it didn't seem pertinent so it sat on the top self. But with collapse runs being passed through its important... at the very least convenient.... So I started constructing a net that sorts through the generations and if more then 10% of the population is a default then the system stops and a text is sent from the system to alert someone...The first part is done and installed, but the second part is still in the works.

The other part of yesterday was starting a run in "Utah"...which is a way of saying a network just like Utah in Clemson... For some reason whenever a manual fitness... the most basic form of fitness test... the value returned is zero, this is followed by the port being used to evaluate hitting an recursion error and crashing. I ran 5 simulations yesterday in the early afternoon and got no problems. I ran later in the day and all of the outcomes where defaults... either timeout or 0.0. So now I'm just continuing  with the net so this doesn't happen.

discombobulation

So I'm using latex for my paper and for some reason I cant get the references to work out for me. I didn't have a latex editor so I used overleaf. There's some problems with it but for the most part they are just a little unuser friendly.  So i downloaded texmaker and I dont know how to use it but im going to toy with it.

henicosaiconization

... okay, so it might seam like im grasping for words here but if  im correct that is a real word. Using the prefix hen-, which is one, and icosa-, which is 20. i get 21, these are Greek . using the icon root word i have picture. and -ization is the act of  making.  so all together i get the act of making 21 pictures/images, if im using the laws of English correctly...  Well I made a script that plotted all the finesses for each simulation. Here is the plots for mutation rate of one... idk why but when i run this script on joey i get this weird outcome.  Some have a weird kind of sine wave flow to them, and others are strait forward. the top one is the chart with all of the following in one. This top one show that even though the average growth levels off at around 25 generations, the system still explores. The other charts shows that each time is a different case but for the most part the system looks around.

manifestation

following this post will be others.
one will be some of the charts that where made
another will be some problems I had/having with latex/bibtex
and this one will be about today
so... uh oh, the following is an email

collaboration computation integration discombobulation frustration

As of now the genetic algorithm is ready for Peters program, the problem is that the system peters is using does not have any function for a feed back. The target zones are hard coded values, and the python back end cannot communicate those values back to the Ga. Peter is working of the issue, the change would allow for feed back, but its in the python. 

This problem is being worked on by the both of us. I am trying to make my program more user friendly, so thats on the agenda.

quadrilateralization

With all the data collected, I now need to make charts and stuff to understand what the data is saying. I have already made a python script that could make a box and whiskers plot given a file, so all I need/needed to do was to get all the log files fitness. I thought i could do this in java, but i know so little of python that I would give it a try. So far I have been able to get plots of each simulation. Now i need to get the plot that represents all the generation of each simulation... so like superimpose all of the simulations into one file. I also want to make it a one stop so I dont have to call anything else.  The challenge is that I have to add one array to the end of another array... I dont know how to do this... I think i can just call append, but I... well really i just have to toy with it...

pixelization

Just a promised, all the pictures.

area of work

screen shot of program running

screen shot of evaluation... and errors

shot of ball plate errors

elation

finally. all 21 samples of all 10 mutation rates is complete. now I just have to averege out the data and plot it. yah. and it only took .....emm well im done any how.

Ps I have screen shots of computers i was using but its on the macs in the office...and its raining so i will get them later...